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The family 36 carbohydrate-binding module of Paenibacillus xylaniclasticus TW1 xylanase: Characterization and recognition in epidermal tissue of sweet potato roots
(2025-07-01)
Tangthirasunun, N.
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Sornyotha, S.
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Jatupornpipat, M.
Paenibacillus xylaniclasticus TW1 was able to aerobically produce a multienzyme complex. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) of the crude enzyme preparation revealed at least 12 proteins that were bound to insoluble cellulose. Only the band representing cellulose-bound protein 12 (CBP12) from SDS-PAGE was identified as xylanase family 11 with a carbohydrate-binding module family 36 (CBM36) using matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry (MALDI-TOF/TOF MS). In this report, CBM36 of P. xylaniclasticus TW1 (PxTW1CBM36) was cloned, expressed, purified and studied for binding characteristic. The results found that PxTW1CBM36 displayed broad binding ability to polysaccharides which high affinity for xylan and insoluble cellulose. Interestingly, this is the first report indicated that CBM36 had an affinity for insoluble cellulose. Although the amino acid residues involved in PxTW1CBM36 binding were conserved, the binding capacity of PxTW1CBM36 do not perturb by the addition of ethylenediaminetetraacetic acid (EDTA). It is possible that PxTW1CBM36 had different binding mechanisms with other CBM36. In addition, the binding characteristic of CBM36 on polysaccharides embedded within plant cell walls was also elucidated. It displayed the strong recognition for ligands located in epidermal tissue of sweet potato roots. Therefore, this study might provide a new tool for targeting enzymes to surface of plant.
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Evaluation of genetic diversity by molecular markers in Indian gooseberry (Phyllanthus emblica)
(2025-01-01)
Poeaim, S.
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Sangsoy, V.
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Tangthirasunun, N.
The genetic diversity and relationships among 16 cultivars of Indian gooseberry (Phyllanthus emblica) using Sequence-Related Amplified Polymorphism (SRAP) and Random Amplified Polymorphic DNA (RAPD) markers were investigated. The cultivars were collected from the Phrae Horticultural Research Center, Thailand. For SRAP analysis, 30 primer combinations were initially tested, comprising five forward and six reverse primers. Seven primer combinations consistently generated well-defined bands and were selected for genetic profiling. These SRAP primers amplified 172 fragments, with 145 (84.30%) polymorphic. For RAPD analysis, 50 primers were evaluated, and eight primers consistently produced clear bands of genetic profiling. These RAPD primers amplified 215 fragments, with 188 (87.44%) polymorphic. The genetic relationships among the cultivars were assessed using a dendrogram constructed with NTSYS-pc (version 2.1X) based on the Unweighted Pair Group Method with Arithmetic Mean (UPGMA). The genetic similarity coefficients ranged from 0.66 to 0.90 for SRAP and from 0.58 to 0.89 for RAPD markers, indicating a high level of genetic diversity among the cultivars.
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Genetic characterization of cassava (Manihot esculenta Crantz) cultivars using ISSR molecular marker
(2024-05-01)
Poeaim, S.
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Sansanee, S.
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Chantaraprasit, T.
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Chareonsap, P. P.
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Tangthirasunun, N.
The genetic diversity of 22 cassava varieties using the inter-simple sequence repeat (ISSR) molecular marker was investigated. Genetic similarity was derived from the matrix of simple similarity coefficients using the unweighted pair group method with arithmetic average (UPGMA). The genetic similarity coefficient ranged from 0.73 to 0.94. The similarity coefficient at 0.73, cluster analysis was clustered to be 22 cassava varieties into two significant groups. The first group was the sweet variety of cassava used for consumption, consisting of Rayong2, Hana-tee and variegated leaves used for decoration. Another group, the bitter variety of cassava used for industry, consisted of Rayong1, Rayong3, Rayong5, Rayong7, Rayong9, Rayong11, Rayong15, Rayong60, Rayong72, Rayong86-13, Rayong90, Kasetsart50, Kasetsart72, Huay Bong60, Huay Bong80, Huay Bong90, Pirun1, Pirun2 and unknown. The sweet and bitter variety contained different levels of cyanide content. So, the ISSR marker might be able characterize two major cassava varieties.
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Assessing genetic diversity of Yellow Star tree using SRAP markers and efficacy of their endophytic fungi in biological control
(2023-05-01)
Poeaim, S.
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Tangthirasunun, N.
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Chareonsap, P. P.
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Poeaim, A.
The result showed that 52 fragments (64.22%) were polymorphic bands from seven combinations of Sequence-Related Amplified Polymorphism (SRAP) markers. The genetic relationship was analyzed using the UPGMA method by NTSYpc software version 2.11X showed a similarity coefficient ranging from 0.59 to 0.98. Endophytic fungi were isolated from fresh leaves of Yellow Star (Schoutenia glomerata King subsp. peregrina (Craib) Roekm. & Hartono and identified by morphology and DNA barcoding. The fungi were identified in Alternaria alternata, Colletotrichum siamense, Diaporthe arengae, Phyllosticta capitalensis, and Xylaria cubensis. The dual culture test evaluated the efficacy of endophytic fungi isolated from Yellow Star tree against Colletotrichum gloeosporioides and Phomopsis asparagi causing disease in asparagus. The results revealed that X. cubensis had the potential to inhibit the spore germination of the C. gloeosporioides ASGC06 and P. asparagi ASGP04, which inhibited spore germination of 99.97 and 100 percent, respectively. However, this fungus should be further studied for biological control and bioactive secondary metabolites.
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Comparative evaluation of leaf and seed methanolic extracts obtained from Sophora tomentosa Linn. for phytochemical, phenolic content, antioxidant and antibacterial activities
(2023-01-01)
Laowklang. Poeaim, P. S.
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Tangthirasunun, N.
Sophora tomentosa Linn. (Fabaceae), also known as a yellow necklace pod, is a traditional medicinal plant widely used to treat dysentery and diarrhea. This study evaluated the biological activities of methanolic leaf and seed extracts of S. tomentosa. The total phenolic content of methanolic leave (STL) seed (STS) and dechlorophyll of leave extract (DSTL) showed 92.02 ±1.78, 38.48 ± 0.61, and 35.35 ± 2.45 mg GAE/g extract), respectively. For antioxidant activity, DPPH, ABTS and FRAP assay was found in leaves (STL) more than in dechlorophyll of leave extract (DSTL) and seed (STS). The methanolic extracts were assessed for antibacterial activity against eight pathogenic bacterial species. The seed extract showed the most potent antibacterial activity against Kocuria rhizophila with 12.85±3.85 mm inhibition zones. For phytochemical evaluation, both leaf and seed extracts exhibited alkaloids and coumarin. The results showed that the leaf extract (STL) had higher antioxidant activity and total phenolic content than seeds and dechlorophyll of leave extract (DSTL). On the other hand, the seed extract presented the most potent antibacterial activity. The current study suggested that both leave and seed extracts of S. tomentosa gave the potential source of natural bioactive compounds, which will be further evaluated in other biological activities.
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Application of organic soybean tempeh in purple sweet potato raisin cookie
(2022-05-01)
Tangthirasunun, N.
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Poeaim, S.
Organic soybean tempeh or tempeh kedelai is made by fermentation with Rhizopus oligosporus was used to produce cookies, as a plant-based protein snack. Four samples with various recipes - purple sweet potato cookie, purple sweet potato raisin cookie, tempeh purple sweet potato cookie and tempeh purple sweet potato raisin cookie – were prepared to determine the physicochemical and sensory features. Chemical analysis found that the tempeh purple sweet potato raisin cookie has the highest moisture (18%) and total proteins (29%). However, the purple sweet potato cookies showed the highest ashes content (2%) and tempeh purple sweet potato cookie showed the highest total lipids (29%). The tempeh purple sweet potato raisin cookie was hardest (61 N). The tempeh purple sweet potato raisin cookie had the highest scores for food acceptability of all qualities in appearance, texture, aroma, colour, taste and general acceptability using a 9-point hedonic scale ranging from slightly liked to very much liked. Therefore, the tempeh purple sweet potato raisin cookie can be accepted as a new snack, that includes a good level of protein and thus a healthy food alternative. Furthermore, if all steps of the production are carefully controlled by USDA or other certifying bodies, thus this product may be labelled as organic product.
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Effective of Neosatorya to control Phomopsis asparagi causing stem blight of asparagus
(2018-12-01)
Mangkalad, T.
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Soytong, K.
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Tangthirasunun, N.
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Poeaim, S.
The biocontrol of stem blight of asparagus Phomosis asparagi was proved by Neosartorya and Talaromyces. The symptoms are appearance as oval-shaped lesions with light brown centres and slightly darker margins. Ten isolates of pathogen were isolated by tissue transplanting technique and confirmed by morphology and molecular identification based on internal transcribed spacer (ITS)-nrDNA sequence as P. asparagi. Fungal mycelia showed undulate margins and colonies white to gray and reached a diameter of 9 cm petri dish after 10 days. Alpha conidia were oblong or spindle-shaped, with a size of 2‒3.5 × 6.5‒8.8 µm. The fungal pathogenicity test showed the asparagus was infected by P. asparagi within 2 days on moisture chamber at room temperature. Neosartorya and Talaromyces were proved antifungal acrtivety against P. asparagi causing of stem blight of asparagus in dual culture. It revealed that N. hiratsuka EU06 was the highest inhibition P. asparagi causing the stem blight of asparagus at 59.50%.

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