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Item type:Publication, Superior Automatic Screening for Human Helminthic Ova by Using Self-supervised Learning Approach-Based Object Classification(2023-01-01) ;Pinetsuksai, Natchapon ;Kittichai, Veerayuth ;Jomtarak, Rangsan ;Jaksukam, KomgritTongloy, TeerawatHuman parasitic infections remain one of public health concerns for 1.5 billion people worldwide including Thailand. Conventional microscopic examination is a gold standard method and often used to identify the helminth ova and filariform larvae and also protozoa cyst in stool-dependent simple smear. The benefits of traditional techniques are diminished by time-consuming, complicated procedures, massive labor, and skilled and trained parasitologists. An automatically rapid screening of the most in need of treatment is considered to replace the conventional technique. Here, we aim to develop a deep convolutional residual network based self-supervised learning model to identify mostly common parasite ova in Thailand. Although small amounts of training data was used to train the proposed model, the result shows superior performance over 95% accuracy. As a result, low values of false positive and false negative based confusion matrix table found revealed the robustness of the proposed models. General accuracy of self-supervised learning based the area under a ROC curve proposed with greater than 94% is also support an outstanding model studied. Therefore, rank of 1% to 10% of fine-tuning data labelled used bring us about a comparable model to that of using a 100% labelled training data. These findings emphasize the transformative potential of the BYOL method for screening of parasitic infection, particularly in resource-limited settings where is a lack of supportive lab equipment and skilled parasitologists to manage a large amount of challenging data in the future. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Development of Self-Supervised Learning with Dinov2-Distilled Models for Parasite Classification in Screening(2023-01-01) ;Pinetsuksai, Natchapon ;Kittichai, Veerayuth ;Jomtarak, Rangsan ;Jaksukam, KomgritTongloy, TeerawatAt present, parasitic infections in humans, such as intestinal parasitic infections and soil-transmitted helminth (STH) infection, remain a public health concern, with screening methods that are simple but time-consuming and require parasitology experts. Microscopy images are increasingly being used to aid diagnosis but creating labels for supervised learning (SL) is a time-consuming, labor-intensive, and costly process. Self-supervised learning (SSL) is a deep learning approach that aims to train models to represent features in unlabeled datasets using automatically generated labels or annotations from the data itself, rather than explicitly labeled human-labeled labels. It is an appropriate method to address the challenges associated with the difficulty of labeling large datasets. A pretrained model that has learned useful data representations from an SSL task is fine-tuned using labeled data to perform well on a specific downstream task. DINOv2 is an SSL model based on the Vision Transformer (ViT) architecture. In this study, we aim to create a model for screening for helminth egg infection using a fine-tuned Dinov2 with a classification layer head to demonstrate that dataset sizes of 1% and 10% are sufficient when compared to SL model. Rather than SL, which requires a significant amount of human data labeling and is generally impractical, the model developed in this study is expected to be used in active surveillance in the future. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Deep learning approaches for challenging species and gender identification of mosquito vectors(2021-12-01) ;Kittichai, Veerayuth ;Pengsakul, Theerakamol ;Chumchuen, Kemmapon ;Samung, YudthanaSriwichai, PatcharaMicroscopic observation of mosquito species, which is the basis of morphological identification, is a time-consuming and challenging process, particularly owing to the different skills and experience of public health personnel. We present deep learning models based on the well-known you-only-look-once (YOLO) algorithm. This model can be used to simultaneously classify and localize the images to identify the species of the gender of field-caught mosquitoes. The results indicated that the concatenated two YOLO v3 model exhibited the optimal performance in identifying the mosquitoes, as the mosquitoes were relatively small objects compared with the large proportional environment image. The robustness testing of the proposed model yielded a mean average precision and sensitivity of 99% and 92.4%, respectively. The model exhibited high performance in terms of the specificity and accuracy, with an extremely low rate of misclassification. The area under the receiver operating characteristic curve (AUC) was 0.958 ± 0.011, which further demonstrated the model accuracy. Thirteen classes were detected with an accuracy of 100% based on a confusion matrix. Nevertheless, the relatively low detection rates for the two species were likely a result of the limited number of wild-caught biological samples available. The proposed model can help establish the population densities of mosquito vectors in remote areas to predict disease outbreaks in advance. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Analysis of multi-hop wireless sensor networks using probability propagation models(2019-01-01) ;Jaksukam, Komgrit ;Tongloy, Teerawat ;Chuwongin, SantadBoonsang, SiridechThis paper presents a formula for estimating the probability of collecting a given amount of data from a propagation model and multi-hop wireless sensor networks (WSNs) based on Monte Carlo simulation with cluster-tree topology. The probabilistic model is based on an analytical model of the IEEE 802.15.4 MAC protocol. The probability of successful node transmission is extended to the probabilities of successful collection at the cluster P(X=k) and sink node P(X ≥ k). A numerical example has been provided for comparing the probabilities. We propose a model to calculate the probability from the ratio of the collection rate to the total number of nodes and therefore provide the likeliness of complete data collection. Finally, the results from our analysis provide an estimation of the probability of achieving successful transmission in WSNs.
