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Digital holography with deep learning for algae identification and classification
(2024-01-01)
Ruttanasirawit, Chinnaphat
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Plaipichit, Suwan
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Thongsuwan, Setthanun
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Thonglim, Pachara
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Phunpruch, Saranya
Recently, the characterization of marine objects, populations and biophysical interactions have become crucial within the research community. In this study, we leverage digital holographic imaging systems and deep learning networks to classify three distinct types of micro-algae: Chlamydomonas, Scenedesmus armatus, and Scenedesmus_sp-L. We employed reconstructed digital holographic images and deep learning to identify the results from both approaches. The integration of holographic imaging holds promises in replacing expensive characterization systems like AFM, x-ray diffraction, and Raman spectroscopy, offering a more costeffective solution. In our system, we utilize in-line microscopic digital holographic imaging to record and reconstruct images of the algae specimens. An essential advantage of holographic techniques is that they do not require intact samples of the specimens for effective object identification. To further enhance the process, we combined deep learning algorithms with holographic imaging, capitalizing on the advanced computers. This combination enables highly effective characterizing and classification of different types of algae. These innovative approaches pave the way for exciting advancement in marine research and monitoring.
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DEEP LEARNING DEVELOPMENTAL MODEL FOR EMBRYO GRADING IN THAI POPULATION
(2024-01-01)
Wiriyasirivaj, Budsaba
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Limkiatsataporn, Sawit
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Pukinghin, Apisit
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Kuekulkomain, Phatrapron
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Promrungrueng, Pornprom
In light of the growing challenges associated with infertility, an increasing number of researchers are resorting to assisted reproductive technologies such as In Vitro Fertilization (IVF). Embryo grading is a crucial step in the IVF process that requires embryologists’ expertise. However, their limited availability has led to the exploration of technological alternatives. This study aims to use deep learning for human embryo grading, with models specifically designed for the dataset in Thailand at Vajira Hospital. The process of IVF at Vajira Hospital presents its own set of challenges since its embryo classification extends beyond the Istanbul consensus. Furthermore, classes that occur infrequently are removed and classes with similarities are merged. We apply transfer learning to pretrained deep learning models like VGG19, VGG16, ResNet152, Resnet101, Xception, InceptionV3, and EfficientNet, to create a system capable of accurately classifying embryo quality scores. Experimental results from the embryo dataset collected from Vajira Hospital in Thailand demonstrate the proposed classifier’s accuracy, precision, recall, f1-score, and AUC superiority. This research contributes to the field of IVF in Thailand by potentially reducing human errors and addressing the demand for skilled embryologists.
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Partial Discharge Classification with Transformer Neural Networks
(2024-01-01)
Cheypoca, Thepjit
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Promphanich, Wiboon
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Thway, Aung Ye
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Hankae, Angelina Phimpissada
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Jeenmuang, Siwakorn
This paper introduces an approach with the Transformer Neural Networks model for partial discharge patterns classification, that consists of corona discharge, internal discharge and surface discharge. The PD measuring circuit suggested in IEC 60270:2000 is used to record Partial discharge signals. Independent parameters such as phase and charge of PD patterns were recorded. The phase value will be encoded into the charge array and Transformer Neural Network is constructed using Positional Embedding and Transformer Encoder Layer. 80% of the recorded data will be used as a training data and 20% recorded data was used for testing of the classification models. Impacts of neuron numbers and network architecture on the PD classification performance will be observed
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Subcellular Protein Patterns Classification Using Extreme Gradient Boosting with Deep Transfer Learning as Feature Extractor
(2024-01-01)
Phankokkruad, Manop
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Wacharawichanant, Sirirat
Proteins are essential structural and functional components of human cells. Understanding and identifying proteins can provide valuable insights into their structure, function and role in human body. Subcellular proteins provide the expression that characterizes the many proteins and their conditions across cell types. This work proposed a classification model for subcellular protein patterns using XGBoost with transfer learning of CNN as the feature extractor. In the model training process, we used ResNet50, VGG16, Xception, and MobileNet as the pre-trained models based on the transfer learning technique to extract different features. The proposed model was used to classify subcellular proteins into 28 patterns. The XGBoost with ResNet50, VGG16, MobileNet, and Xception model achieved an accuracy level of 92.20% 92.77%, 91.63%, and 91.44%, respectively. The XGBoost with ResNet50, VGG16, MobileNet, and Xception model obtained an F1 score of 0.9179, 0.9233, 0.9131, and 0.9152, respectively. Considering the F1 score, All XGBoost with transfer learning of CNN models gave a high score. Therefore, all evaluation parameters clearly demonstrate the high performance of the subcellular protein pattern classification model.
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Total soluble solids, dry matter content prediction and maturity stage classification of durian fruit using long-wavelength NIR reflectance
(2023-12-01)
Saenphon, Chirawan
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Ditcharoen, Sirirak
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Malai, Chayuttapong
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Saengprachatanarug, Khwantri
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Wongpichet, Seree
The DM and TSS of durian pulp moving on a conveyor belt were measured for their rapid and non-destructive qualities based on quantitative and qualitative measurements. The calibration set and prediction set equaled 209 and 69 pulps, respectively. The quantitative test compared the performance of PLS regression for DM and TSS prediction developed from full wavelength (860–1754 nm) and a few significant variables using SPA, GA, and VIP methods. The qualitative test identified the possibility of maturity stage classification by comparing three supervised machine learning classifiers, namely SVM, random forest (RF), and LDA. Effective models for DM and TSS prediction were developed from second derivatives spectra combined with the GA method, exhibiting r<sup>2</sup>, SEP, and RPD of 0.85, 4.50%, and 2.64, respectively for DM, and 0.66, 5.15%, and 1.60, respectively, for TSS. The model classifying samples into two distinct groups, namely “reject” and “pass,” utilizing the LDA algorithm, exhibited an impressive accuracy rate of 94.20%, making it a suitable choice for quality assurance purposes. This result indicates that the few effective variables were more efficient than full wavelength and improved model accuracy with greater model stability. Enhancing the classification model could involve data sample balancing in each group, leading to further improvements.
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Rapid and accurate classification of Aspergillus ochraceous contamination in Robusta green coffee bean through near-infrared spectral analysis using machine learning
(2023-03-01)
Ruttanadech, Nuttapong
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Phetpan, Kittisak
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Srisang, Naruebodee
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Srisang, Siriwan
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Chungcharoen, Thatchapol
Near-infrared (NIR) spectral-based classification of Aspergillus ochraceous contamination in the Robusta green coffee bean was investigated. Six different learning algorithms, including linear discriminant analysis (LDA), support vector machine (SVM), k-nearest neighbors (KNN), decision tree (Tree), Naive Bayes (NB), and quadratic discriminant analysis (QDA), were applied for the investigating purpose. Four classes of fungal contamination on coffee beans, non-fungal contaminated beans on day 1 and day 3 (NCB-D1 and NCB-D3) and fungal contaminated beans on day 1 and day 3 (CB-D1 and CB-D3), were set for the classification intention. Based on the 6 learning algorithms, the Tree approach was optimal, displaying a training accuracy of 97.5%. As proven by the testing dataset, the classification accuracy of the Tree was also at 97.5%. With this number, the Tree could correctly classify 100% between the contaminated and non-contaminated coffee beans. These findings exhibit the potential of the NIR spectroscopy accompanied by machine learning for the early detection of fungal contamination in green coffee beans.
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Improving the non-destructive maturity classification model for durian fruit using near-infrared spectroscopy
(2023-03-01)
Ditcharoen, Sirirak
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Sirisomboon, Panmanas
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Saengprachatanarug, Khwantri
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Phuphaphud, Arthit
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Rittiron, Ronnarit
The maturity state of durian fruit is a key indicator of quality before trading. This research aims to improve the near-infrared (NIR) model for classifying the maturity stage of durian fruit using a completely non-destructive measurement. Both NIR spectrometers were investigated: the short wavelength NIR (SWNIR) ranging from 450 to 1000 nm and long wavelength NIR (LWNIR) ranging from 860 to 1750 nm. The samples collected for experimentation consisted of four stages: immaturity, prematurity, maturity, and ripe. Each fruit was scanned at the rind position on the main fertile lobe (header, middle, and tail) and stem. The classification models were developed using three supervised machine learning algorithms: linear discriminant analysis (LDA), support vector machine (SVM), and K-Nearest neighbours (KNN). The analysis results revealed that the use of durian rind spectra only obtained between 83.15% and 88.04% accuracy for the LWNIR spectrometer, while the SWNIR spectrometer provided 64.73 to 93.77% accuracy. The performance of model increases when developing with combination between rind and stem spectra. The LDA model developed using a combination of rind and stem spectra provided the greatest efficiency, exhibiting 97.28% and 100% accuracy for LWNIR and SWNIR spectrometers, respectively. The LDA model is therefore recommended for obtaining spectra from smoothing moving average (MA) + baseline of rind position and when used in combination with the MA + standard normal variance (SNV) of stem spectra. The NIR spectroscopy indicated high potential for non-destructive estimation of the durian maturity stage. This process could be used for quality control in the durian export industry to solve the problem of unripe durian being mixed with ripe fruit.
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Backpropagation Neural Network with Adaptive Learning Rate for Classification
(2023-01-01)
Jullapak, Rujira
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Thammano, Arit
This research aims to improve the classification accuracy by modifying an original backpropagation neural network. In the proposed BPNN-ZMP, the learning rates were automatic tuned to improve the classification accuracy. Breast Cancer Coimbra dataset and Banknote Authentication dataset were used for testing the model performances. The results demonstrate that BPNN-ZMP improved over the original backpropagation neural network by 12.12 and 11.46% for Breast Cancer Coimbra dataset and Banknote Authentication dataset respectively. Although BPNN-ZMP could improve the model accuracy, the high accuracy in neural network backpropagation has been challenged in future work.
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Images Retrieval and Classification for Acute Myeloid Leukemia Blood Cell Using Deep Metric Learning
(2023-01-01)
Naing, Kaung Myat
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Kittichai, Veerayuth
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Tongloy, Teerawat
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Chuwongin, Santhad
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Boonsang, Siridech
Deep metric learning-based image retrieval systems have recently been used in medical applications because they provide clinically relevant information-based similar images based on prior knowledge. Although train examiners and deep learning models successfully analyze leukocyte cells, there are still numerous difficult challenges due to biological variation, time constraints, and a variety of image-related aspects. In this study, we propose a deep metric learning model-based image retrieval and classification system for acute myeloid leukemia blood cells to address these issues and assist physicians. The proposed model utilizes the pre-trained ResNet-34 model as the backbone network, embedding loss with multi similarity miner, and M-Per-Class sampling strategy to learn an embedding function. The five embedding losses were also applied to compare the four performances in order to determine the best loss-based model. Based on the best loss-based model, the class-wise precision and sensitivity using a neighborhood size are also presented. The results show that the contrastive loss-based deep metric learning model achieved the highest precision of 94.90%, sensitivity of 94.85%, specificity of 99.64%, and accuracy of 99.32% in model comparison. Except for a few failures in small classes, the class-wise precision and sensitivity scores looked to be impressive in all classes. Therefore, this proposed system can highly be effective in screening and diagnosing of AML-related white blood cell stages that cause serious cancer.
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Comment Usefulness Classification on Youtube using Artificial Neural Networks
(2023-01-01)
Takhom, Akkharawoot
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Chirawat, Pimmada
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Boonkwan, Prachya
Social media represents a vast and constantly evolving data resource, utilized across various domains, including business. However, discerning valuable data for business purposes demands significant analysis and labor, leading to potential errors. To address this, we propose employing deep learning models for classifying useful data, focusing on a case study of quality comments on YouTube in the Thai language. Specifically, we experiment with four sequence-To-sequence models: Recurrent Neural (RNN), Long Short-Term Memory (LSTM), bidirectional LSTM (BiLSTM), and Gated Recurrent Unit (GRU). The experimental results reveal that the Bi-LSTM model exhibits the most promising performance, achieving an accuracy of 94%. Furthermore, Bi-LSTM demonstrates remarkable precision of 0.94, recall of 0.95, and an F1-score of 0.95, underscoring its proficiency in the precise classification of quality comments.

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