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    Item type:Publication,
    Effects of Cilia Movement on Fluid Velocity: I Model of Fluid Flow due to a Moving Solid in a Porous Media Framework
    (2021-01-01)
    Wuttanachamsri, Kanognudge
    ;
    Schreyer, Lynn
    Cilia, hair-like, organelles that are found in the respiratory tract (nasal cavity, pharynx, trachea, and bronchi) rhythmically beat to clear mucus from the airways. Here, we formulate a novel model of fluid flow due to the movement of cilia, and in the companion paper, Part II, the model is numerically solved under simplifying assumptions using physical data from lung bronchi. The model is based on a porous media model, modified so that instead of fluid moving through a solid porous structure, the solid moves the fluid. Two macroscale regions are considered: a porous medium and a free-fluid domain. We use hybrid mixture theory to derive the governing equations so that we have a broader understanding of the assumptions used to obtain the model. The resulting model is the classical Brinkman Stokes equations generalized to account for the movement of the cilia. The model can be used as a prototype to determine the movement of fluid due to the given movement of a solid component of a porous material.
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    Item type:Publication,
    Free interfaces at the tips of the cilia in the one-dimensional periciliary layer
    (2020-11-01)
    Wuttanachamsri, Kanognudge
    Cilia on the surface of ciliated cells in the respiratory system are organelles that beat forward and backward to generate metachronal waves to propel mucus out of lungs. The layer that contains the cilia, coating the interior epithelial surface of the bronchi and bronchiolesis, is called the periciliary layer (PCL). With fluid nourishment, cilia can move efficiently. The fluid in this region is named the PCL fluid and is considered to be an incompressible, viscous, Newtonian fluid. We propose there to be a free boundary at the tips of cilia underlining a gas phase while the cilia are moving forward. The Brinkman equation on a macroscopic scale, in which bundles of cilia are considered rather than individuals, with the Stefan condition was used in the PCL to determine the velocity of the PCL fluid and the height/shape of the free boundary. Regarding the numerical methods, the boundary immobilization technique was applied to immobilize the moving boundaries using coordinate transformation (working with a fixed domain). A finite element method was employed to discretize the mathematical model and a finite difference approach was applied to the Stefan problem to determine the free interface. In this study, an effective stroke is assumed to start when the cilia make a 140<sup>◦</sup> angle to the horizontal plane and the velocitiesof cilia increase until the cilia are perpendicular to the horizontal plane. Then, the velocities of the cilia decrease until the cilia make a 40<sup>◦</sup> angle with the horizontal plane. From the numerical results, we can see that although the velocities of the cilia increase and then decrease, the free interface at the tips of the cilia continues increasing for the full forward phase. The numerical results are verified and compared with an exact solution and experimental data from the literature. Regarding the fixed boundary, the numerical results converge to the exact solution. Regarding the free interface, the numerical solutions were compared with the average height of the PCL in non-cystic fibrosis (CF) human tissues and were in excellent agreement. This research also proposes possible values of parameters in the mathematical model in order to determine the free interface. Applications of these fluid flows include animal hair, fibers and filter pads, and rice fields.
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    Item type:Publication,
    Effects of Cilia Movement on Fluid Velocity: II Numerical Solutions Over a Fixed Domain
    (2020-09-01)
    Wuttanachamsri, Kanognudge
    ;
    Schreyer, Lynn
    Cilia are hair-like structures that move in unison with the purpose of propelling fluid. They are found, for example, in the human bronchiole respiratory system and molluscs. Here, we validate a novel model of fluid flow due to the movement of cilia in a fixed computational domain. We consider two domains, a porous medium and a free-fluid domain and numerically solve the Stokes–Brinkman system of equations where the cilia geometry and velocity are input and the velocity of fluid due to the movement of cilia is determined. The cilia velocities and geometry are approximated using human lung cilia experimental data available in the literature. We use a mixed finite element method of Taylor-Hood type to calculate the fluid velocities in a three-dimensional domain. The results are validated in a simple case by comparison with an exact solution with good agreement. This problem can be used as a benchmark for the movement of fluid phases due to the self-propelled movement of a solid phase in a porous medium.