Phankokkruad, Manop
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Phankokkruad, Manop
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manop.ph@kmitl.ac.th
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Item type:Publication, Subcellular Protein Patterns Classification Using Extreme Gradient Boosting with Deep Transfer Learning as Feature Extractor(2024-01-01); Wacharawichanant, SiriratProteins are essential structural and functional components of human cells. Understanding and identifying proteins can provide valuable insights into their structure, function and role in human body. Subcellular proteins provide the expression that characterizes the many proteins and their conditions across cell types. This work proposed a classification model for subcellular protein patterns using XGBoost with transfer learning of CNN as the feature extractor. In the model training process, we used ResNet50, VGG16, Xception, and MobileNet as the pre-trained models based on the transfer learning technique to extract different features. The proposed model was used to classify subcellular proteins into 28 patterns. The XGBoost with ResNet50, VGG16, MobileNet, and Xception model achieved an accuracy level of 92.20% 92.77%, 91.63%, and 91.44%, respectively. The XGBoost with ResNet50, VGG16, MobileNet, and Xception model obtained an F1 score of 0.9179, 0.9233, 0.9131, and 0.9152, respectively. Considering the F1 score, All XGBoost with transfer learning of CNN models gave a high score. Therefore, all evaluation parameters clearly demonstrate the high performance of the subcellular protein pattern classification model. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Improving Classification Efficiency Based on Combination of Extreme Gradient Boosting and Deep Transfer Learning(2023-01-01); Wacharawichanant, SiriratThe leading causes of blindness and low vision are ocular disease. Ocular disease such as glaucoma, cataract, diabetic retinopathy, and macular degeneration, which are diseases in which the risk of vision loss. Unfortunately, some ocular diseases have no symptoms until the late stages. Therefore, early-stage diagnosis of ocular disease is the best way to prevent vision loss. This work proposed the classification models for ocular disease classification using XGBoost in combination with deep transfer learning of CNN as the feature extractor. In the model training process, we used the pre-trained model including Xception and ResNet50 based on the transfer learning technique to extract different features. The proposed model was used to classify ocular disease into eight patterns. The XGBoost in combination with the ResNet50 model achieved an accuracy level of 87.82%, precision of 88.15%, sensitivity of 87.82%, and F1 score of 87.82%. The XGBoost in combination with the Xception model acquired an accuracy level of 87.02%, precision of 87.35%, sensitivity of 87.02%, and F1 score of 87.02%. By considering the F1 score, XGBoost in combination with transfer learning of CNN models gave a high score. Therefore, all evaluation parameters clearly indicate the high performance of the ocular disease classification model. The conclusion presents that the proposed method acquires more excellent performance than individual deep learning models. - Some of the metrics are blocked by yourconsent settings
Item type:Publication, Stages of Progression Classification of Alzheimer's Disease Using Deep Transfer Learning Models with Over-Sampling(2022-01-01); Wacharawichanant, SiriratAlzheimer's disease is a chronic neurodegenerative disease that affected patients loss of memory, ability of thinking, reading, and cognitive decline. The Alzheimer's disease divided stages of progression into four general stages on the basis of their symptoms. The early diagnosis helps to slow down the disease and reduce the costs of treatment. Since Alzheimer's disease has four stages of progression, the classification problems are those where a stage must be predicted in the case of an unequal number of instances of each class. This study has proposed the classification the stages of progression of Alzheimer's disease using four transfer learning models such as VGG19, Xception, ResNet50, and MobileNetV2. The proposed models classify Alzheimer's disease into four stage of progression. The models gained an accuracy level of VGG19, Xception, ResNet50, and MobileNetV2 model of 77.73%, 82.46%, 76.28% and 79.29%, respectively. By considering the F1 score, the Xception, VGG19, and ResNet50, and MobileNetV2 models gave the high score of 0.7995, 0.8870, 0.8305, and 0.5993, respectively. Therefore, the VGG19 model is the best model by considering the F1 score that means the VGG19 model is the best model in overall performance. Finally, this study measures the AUC value that indicates the ability to classify between classes. The results show that AUC value of MobileNetV2, Xception, ResNet50, and VGG19 are 0.9290, 0.9539, 0.7937, and 0.8037, respectively. Therefore, the Xception model is the best model that has capable of distinguishing the stages of progression of the Alzheimer's disease.