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    Item type:Publication,
    Automatic identification of medically important mosquitoes using embedded learning approach-based image-retrieval system
    (2023-12-01) ;
    Kaewthamasorn, Morakot
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    Samung, Yudthana
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    Jomtarak, Rangsan
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    Naing, Kaung Myat
    Mosquito-borne diseases such as dengue fever and malaria are the top 10 leading causes of death in low-income countries. Control measure for the mosquito population plays an essential role in the fight against the disease. Currently, several intervention strategies; chemical-, biological-, mechanical- and environmental methods remain under development and need further improvement in their effectiveness. Although, a conventional entomological surveillance, required a microscope and taxonomic key for identification by professionals, is a key strategy to evaluate the population growth of these mosquitoes, these techniques are tedious, time-consuming, labor-intensive, and reliant on skillful and well-trained personnel. Here, we proposed an automatic screening, namely the deep metric learning approach and its inference under the image-retrieval process with Euclidean distance-based similarity. We aimed to develop the optimized model to find suitable miners and suggested the robustness of the proposed model by evaluating it with unseen data under a 20-returned image system. During the model development, well-trained ResNet34 are outstanding and no performance difference when comparing five data miners that showed up to 98% in its precision even after testing the model with both image sources: stereomicroscope and mobile phone cameras. The robustness of the proposed—trained model was tested with secondary unseen data which showed different environmental factors such as lighting, image scales, background colors and zoom levels. Nevertheless, our proposed neural network still has great performance with greater than 95% for sensitivity and precision, respectively. Also, the area under the ROC curve given the learning system seems to be practical and empirical with its value greater than 0.960. The results of the study may be used by public health authorities to locate mosquito vectors nearby. If used in the field, our research tool in particular is believed to accurately represent a real-world scenario.
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    Item type:Publication,
    Intelligent identification of medical and veterinary intracellular protozoa by using self-supervised learning
    (2026-12-01) ;
    Kaewthamasorn, Morakot
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    Soiphet, Naruchit
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    Tongloy, Teerawat
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    Background: Zoonotic diseases pose a major threat to both human and animal health, contributing significantly to global morbidity and mortality. Accurate diagnosis is crucial for effective control and treatment, with microscopic examination serving as the gold standard, supplemented by highly sensitive molecular biology techniques. However, these confirmatory methods require skilled personnel and are subject to inter- and intra-rater variability. An innovative solution lies in artificial intelligence (AI)-powered automated tools, which offer a promising alternative. This study aimed to develop a self-supervised learning (SSL) approach using the Distillation with No Labels (DiNOv2) algorithm to extract features of protozoa from Giemsa-stained blood samples. Methods: The development of self-supervised learning algorithms, including DiNOv2, was based on archived samples of clinically significant and significant veterinary microorganisms. These models were evaluated in comparison to a baseline Vision Transformer (ViT). Results: Among the tested SSL models, the DiNOv2-Small version achieved exceptional performance, surpassing 99% accuracy and specificity while maintaining the lowest misclassification rate (0.263). It also demonstrated a high area under the curve (AUC) value of 0.990, underscoring its robust classification capability. Remarkably, even when trained on only 20% of the dataset, the SSL models retained performance levels comparable to baseline models trained on the full dataset. However, further reducing the sample size below 20% led to notable declines in evaluation metrics: accuracy dropped by 5–7%, recall decreased from 37.9% to 35.1%, precision fell from 35% to 25.2%, and the F1 score declined from 31.1% to 21.5%. Additionally, the AUC decreased by 4–11%, while the misclassification rate increased, indicating reduced robustness. A key limitation of this study was the highly imbalanced fine-tuned dataset between classes. Nevertheless, the inconsistent performance observed may be mitigated by employing the larger DiNOv2 model, which improves the F1 score and enhances the model’s ability to handle imbalanced data while reducing reliance on labeled data. Conclusions: The proposed method can assist laboratory technicians, particularly in resource-limited healthcare settings. Furthermore, the findings support the potential deployment of this AI-based tool for automated screening in both medical and veterinary applications.
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    Item type:Publication,
    Classification for avian malaria parasite Plasmodium gallinaceum blood stages by using deep convolutional neural networks
    (2021-12-01) ;
    Kaewthamasorn, Morakot
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    Thanee, Suchansa
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    Jomtarak, Rangsan
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    Klanboot, Kamonpob
    The infection of an avian malaria parasite (Plasmodium gallinaceum) in domestic chickens presents a major threat to the poultry industry because it causes economic loss in both the quality and quantity of meat and egg production. Computer-aided diagnosis has been developed to automatically identify avian malaria infections and classify the blood infection stage development. In this study, four types of deep convolutional neural networks, namely Darknet, Darknet19, Darknet19-448 and Densenet201 are used to classify P. gallinaceum blood stages. We randomly collected a dataset of 12,761 single-cell images consisting of three parasite stages from ten-infected blood films stained by Giemsa. All images were confirmed by three well-trained examiners. The study mainly compared several image classification models and used both qualitative and quantitative data for the evaluation of the proposed models. In the model-wise comparison, the four neural network models gave us high values with a mean average accuracy of at least 97%. The Darknet can reproduce a superior performance in the classification of the P. gallinaceum development stages across any other model architectures. Furthermore, the Darknet has the best performance in multiple class-wise classification, with average values of greater than 99% in accuracy, specificity, and sensitivity. It also has a low misclassification rate (< 1%) than the other three models. Therefore, the model is more suitable in the classification of P. gallinaceum blood stages. The findings could help us create a fast-screening method to help non-experts in field studies where there is a lack of specialized instruments for avian malaria diagnostics.
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    Item type:Publication,
    Development of Self-Supervised Learning with Dinov2-Distilled Models for Parasite Classification in Screening
    (2023-01-01)
    Pinetsuksai, Natchapon
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    Jomtarak, Rangsan
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    Tongloy, Teerawat
    At present, parasitic infections in humans, such as intestinal parasitic infections and soil-transmitted helminth (STH) infection, remain a public health concern, with screening methods that are simple but time-consuming and require parasitology experts. Microscopy images are increasingly being used to aid diagnosis but creating labels for supervised learning (SL) is a time-consuming, labor-intensive, and costly process. Self-supervised learning (SSL) is a deep learning approach that aims to train models to represent features in unlabeled datasets using automatically generated labels or annotations from the data itself, rather than explicitly labeled human-labeled labels. It is an appropriate method to address the challenges associated with the difficulty of labeling large datasets. A pretrained model that has learned useful data representations from an SSL task is fine-tuned using labeled data to perform well on a specific downstream task. DINOv2 is an SSL model based on the Vision Transformer (ViT) architecture. In this study, we aim to create a model for screening for helminth egg infection using a fine-tuned Dinov2 with a classification layer head to demonstrate that dataset sizes of 1% and 10% are sufficient when compared to SL model. Rather than SL, which requires a significant amount of human data labeling and is generally impractical, the model developed in this study is expected to be used in active surveillance in the future.
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    Item type:Publication,
    Deep learning approaches for challenging species and gender identification of mosquito vectors
    (2021-12-01) ;
    Pengsakul, Theerakamol
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    Chumchuen, Kemmapon
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    Samung, Yudthana
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    Sriwichai, Patchara
    Microscopic observation of mosquito species, which is the basis of morphological identification, is a time-consuming and challenging process, particularly owing to the different skills and experience of public health personnel. We present deep learning models based on the well-known you-only-look-once (YOLO) algorithm. This model can be used to simultaneously classify and localize the images to identify the species of the gender of field-caught mosquitoes. The results indicated that the concatenated two YOLO v3 model exhibited the optimal performance in identifying the mosquitoes, as the mosquitoes were relatively small objects compared with the large proportional environment image. The robustness testing of the proposed model yielded a mean average precision and sensitivity of 99% and 92.4%, respectively. The model exhibited high performance in terms of the specificity and accuracy, with an extremely low rate of misclassification. The area under the receiver operating characteristic curve (AUC) was 0.958 ± 0.011, which further demonstrated the model accuracy. Thirteen classes were detected with an accuracy of 100% based on a confusion matrix. Nevertheless, the relatively low detection rates for the two species were likely a result of the limited number of wild-caught biological samples available. The proposed model can help establish the population densities of mosquito vectors in remote areas to predict disease outbreaks in advance.
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    Item type:Publication,
    Superior Auto-Identification of Trypanosome Parasites by Using a Hybrid Deep-Learning Model
    (2023-10-01) ;
    Kaewthamasorn, Morakot
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    Thanee, Suchansa
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    Sasisaowapak, Thanyathep
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    Naing, Kaung Myat
    Trypanosomiasis is a significant public health problem in several regions across the world, including South Asia and Southeast Asia. The identification of hotspot areas under active surveillance is a fundamental procedure for controlling disease transmission. Microscopic examination is a commonly used diagnostic method. It is, nevertheless, primarily reliant on skilled and experienced personnel. To address this issue, an artificial intelligence (AI) program was introduced that makes use of a hybrid deep learning technique of object identification and object classification neural network backbones on the in-house low-code AI platform (CiRA CORE). The program can identify and classify the protozoan trypanosome species, namely Trypanosoma cruzi, T. brucei, and T. evansi, from oil-immersion microscopic images. The AI program utilizes pattern recognition to observe and analyze multiple protozoa within a single blood sample and highlights the nucleus and kinetoplast of each parasite as specific characteristic features using an attention map. To assess the AI program's performance, two unique modules are created that provide a variety of statistical measures such as accuracy, recall, specificity, precision, F1 score, misclassification rate, receiver operating characteristics (ROC) curves, and precision versus recall (PR) curves. The assessment findings show that the AI algorithm is effective at identifying and categorizing parasites. By delivering a speedy, automated, and accurate screening tool, this technology has the potential to transform disease surveillance and control. It could also assist local officials in making more informed decisions on disease transmission-blocking strategies.
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    Item type:Publication,
    A deep contrastive learning-based image retrieval system for automatic detection of infectious cattle diseases
    (2025-12-01) ;
    Kaewthamasorn, Morakot
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    Arnuphaprasert, Apinya
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    Jomtarak, Rangsan
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    Naing, Kaung Myat
    Anaplasmosis, which is caused by Anaplasma spp. and transmitted by tick bites, is one of the most serious livestock animal diseases worldwide, causing significant economic losses as well as public health issues. Anaplasma marginale, a gram-negative intracellular obligate bacterium, can cause disease in cattle and other ruminants. Because of the insufficient quality of the slides, a microscopic diagnostic procedure is time-consuming and challenging to diagnose. Intra- and inter-rater variation is frequently imposed on by technicians who are underqualified and unexperienced. Alternatively, algorithms could support local employees in tracking disease transmission and quick action, especially in Thailand where this cattle disease is common. As a result, the study intends to create an automated tool based on a deep neural network linked with an image-retrieval procedure for recognizing infections in microscopic pictures. The Resnext-50 model, which serves as the embedding space’s backbone and is optimized by Triplet-Margin loss, outperforms, with averaged accuracy and specificity ratings of 91.30 percent and 92.83 percent, respectively. The model’s performance was also improved by a fine-tuned procedure between k-nearest neighbor and its normalized distance of each data point, including precision of 0.833 ± 0.134, specificity of 0.930 ± 0.054, recall of 0.838 ± 0.118, and accuracy of 0.915 ± 0.025, respectively. Five-fold cross-validation confirms that the trained model using the optimal k-nearest neighbor (kNN) for the image-based retrieval system, involving 12 images, prevents overfitting via dataset variations indicating areas under the receiver operating curve rankings ranging from 0.917 to 0.922. The image retrieval technique demonstrated in this research is a prototype for a variety of applications. The findings may aid in the early diagnosis of anaplasmosis infections in remote areas without access to veterinary care or costly molecular diagnostic tools.
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    Item type:Publication,
    Identification of veterinary and medically important blood parasites using contrastive loss-based self-supervised learning
    (2024-11-01)
    Busayakanon, Supasuta
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    Kaewthamasorn, Morakot
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    Pinetsuksai, Natchapon
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    Tongloy, Teerawat
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    Background and Aim: Zoonotic diseases caused by various blood parasites are important public health concerns that impact animals and humans worldwide. The traditional method of microscopic examination for parasite diagnosis is labor-intensive, time-consuming, and prone to variability among observers, necessitating highly skilled and experienced personnel. Therefore, an innovative approach is required to enhance the conventional method. This study aimed to develop a self-supervised learning (SSL) approach to identify zoonotic blood parasites from microscopic images, with an initial focus on parasite species classification. Materials and Methods: We acquired a public dataset featuring microscopic images of Giemsa-stained thin blood films of trypanosomes and other blood parasites, including Babesia, Leishmania, Plasmodium, Toxoplasma, and Trichomonad, as well as images of both white and red blood cells. The input data were subjected to SSL model training using the Bootstrap Your Own Latent (BYOL) algorithm with Residual Network 50 (ResNet50), ResNet101, and ResNet152 as the backbones. The performance of the proposed SSL model was then compared to that of baseline models. Results: The proposed BYOL SSL model outperformed supervised learning models across all classes. Among the SSL models, ResNet50 consistently achieved high accuracy, reaching 0.992 in most classes, which aligns well with the patterns observed in the pre-trained uniform manifold approximation and projection representations. Fine-tuned SSL models exhibit high performance, achieving 95% accuracy and a 0.960 area under the curve of the receiver operating characteristics (ROC) curve even when fine-tuned with 1% of the data in the downstream process. Furthermore, 20% of the data for training with SSL models yielded ≥95% in all other statistical metrics, including accuracy, recall, precision, specification, F1 score, and ROC curve. As a result, multi-class classification prediction demonstrated that model performance exceeded 91% for the F1 score, except for the early stage of Trypanosoma evansi, which showed an F1 score of 87%. This may be due to the model being exposed to high levels of variation during the developmental stage. Conclusion: This approach can significantly enhance active surveillance efforts to improve disease control and prevent outbreaks, particularly in resource-limited settings. In addition, SSL addresses significant challenges, such as data variability and the requirement for extensive class labeling, which are common in biology and medical fields.
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    Item type:Publication,
    Automatic recognition of parasitic products in stool examination using object detection approach
    (2022-01-01)
    Naing, Kaung Myat
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    ; ; ;
    Tongloy, Teerawat
    Background. Object detection is a new artificial intelligence approach to morpho- logical recognition and labeling parasitic pathogens. Due to the lack of equipment and trained personnel, artificial intelligence innovation for searching various parasitic products in stool examination will enable patients in remote areas of undeveloped countries to access diagnostic services. Because object detection is a developing approach that has been tested for its effectiveness in detecting intestinal parasitic objects such as protozoan cysts and helminthic eggs, it is suitable for use in rural areas where many factors supporting laboratory testing are still lacking. Based on the literatures, the YOLOv4-Tiny produces faster results and uses less memory with the support of low- end GPU devices. In comparison to the YOLOv3 and YOLOv3-Tiny models, this study aimed to propose an automated object detection approach, specifically the YOLOv4- Tiny model, for automatic recognition of intestinal parasitic products in stools. Methods. To identify protozoan cysts and helminthic eggs in human feces, the three YOLO approaches; YOLOv4-Tiny, YOLOv3, and YOLOv3-Tiny, were trained to recognize 34 intestinal parasitic classes using training of image dataset. Feces were processed using a modified direct smear method adapted from the simple direct smear and the modified Kato-Katz methods. The image dataset was collected from intestinal parasitic objects discovered during stool examination and the three YOLO models were trained to recognize the image datasets. Results. The non-maximum suppression technique and the threshold level were used to analyze the test dataset, yielding results of 96.25% precision and 95.08% sensitivity for YOLOv4-Tiny. Additionally, the YOLOv4-Tiny model had the best AUPRC performance of the three YOLO models, with a score of 0.963. Conclusion. This study, to our knowledge, was the first to detect protozoan cysts and helminthic eggs in the 34 classes of intestinal parasitic objects in human stools.
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    Item type:Publication,
    Images Retrieval and Classification for Acute Myeloid Leukemia Blood Cell Using Deep Metric Learning
    (2023-01-01)
    Naing, Kaung Myat
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    Tongloy, Teerawat
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    Deep metric learning-based image retrieval systems have recently been used in medical applications because they provide clinically relevant information-based similar images based on prior knowledge. Although train examiners and deep learning models successfully analyze leukocyte cells, there are still numerous difficult challenges due to biological variation, time constraints, and a variety of image-related aspects. In this study, we propose a deep metric learning model-based image retrieval and classification system for acute myeloid leukemia blood cells to address these issues and assist physicians. The proposed model utilizes the pre-trained ResNet-34 model as the backbone network, embedding loss with multi similarity miner, and M-Per-Class sampling strategy to learn an embedding function. The five embedding losses were also applied to compare the four performances in order to determine the best loss-based model. Based on the best loss-based model, the class-wise precision and sensitivity using a neighborhood size are also presented. The results show that the contrastive loss-based deep metric learning model achieved the highest precision of 94.90%, sensitivity of 94.85%, specificity of 99.64%, and accuracy of 99.32% in model comparison. Except for a few failures in small classes, the class-wise precision and sensitivity scores looked to be impressive in all classes. Therefore, this proposed system can highly be effective in screening and diagnosing of AML-related white blood cell stages that cause serious cancer.