Chotpatiwetchkul, Warot

Preferred name

Main Affiliation

School of Science

warot.ch@kmitl.ac.th

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3D-QSAR studies of 4-aminoquinoline-pyrimidine hybrids as antimalarial inhibitors targeting wild-type P. falciparum dihydrofolate reductase
(2025-11-01)
Jitonnom, Jitrayut
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Jitonnom, Wijitra
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Tue-Ngeun, Panthip
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Saparpakorn, Patchreenart
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Hannongbua, Supa
Three-dimensional quantitative structure–activity relationship (3D-QSAR) was determined on a set of 4-aminoquinoline-pyrimidine hybrids to elucidate the 3D structural features affecting the antimalaria activity against wild-type Plasmodium falciparum dihydrofolate reductase (PfDHFR). Several combined analyses of comparative molecular field (CoMFA), comparative molecular similarity indices (CoMSIA) and noncovalent interaction (NCI) were carried out. The 3D descriptors capturing steric, electrostatic and hydrophobic features of molecules and their correlation with experimental activity were established (CoMFA; q2= 0.506, r2= 0.875, SEE = 0.227 and CoMSIA; q2= 0.614, r2= 0.871, SEE = 0.230). Key structural features are drawn from the models: The R1substituent prefers small, less steric groups, while the R2substituent favors larger, more sterically bulky hydrophobic groups. Introducing hydrogen bond acceptor and donor groups at R2and the N-substituted linkage enhances activity. The docking and NCI results revealed extensive hydrophobic interactions and its stabilization to the binding process of PfDHFR.
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CO2photoreduction on mixed Ti/Zr-MOF-525: bicarbonate as the active intermediate and the role of Ti substitution
(2026-02-11)
Puengpoka, Thanyaporn
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Santatiwongchai, Jirapat
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Chotpatiwetchkul, Warot
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Bureekaew, Sareeya
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Saleh, Muhammad
The photocatalytic reduction of CO<inf>2</inf> in metal–organic frameworks (MOFs) offers a sustainable route to C<inf>1</inf> fuels and chemicals. Herein, density functional theory (DFT) calculations elucidate CO<inf>2</inf> reduction on mixed Ti/Zr-MOF-525 clusters bearing missing linker defects, modeled by Zr<inf>6</inf>, Ti<inf>1</inf>Zr<inf>5</inf>, and Ti<inf>2</inf>Zr<inf>4</inf> clusters. Two distinct mechanistic pathways are identified: the OH-passive and OH-assisted routes. In the passive case, CO<inf>2</inf> binds weakly at a coordinatively unsaturated Ti/Zr site and undergoes direct hydrogenation to CO and HCOOH, with desorption being thermodynamically preferred over further hydrogenation. In contrast, the OH-assisted pathway proceeds via a bicarbonate-mediated mechanism, where surface –OH attacks adsorbed CO<inf>2</inf> to form node-bound *HCO<inf>3</inf>. This step is both thermodynamically favorable and kinetically accessible (ΔG‡ < 0.5 eV). Subsequent proton-electron additions convert *HCO<inf>3</inf> to *OCHO and H<inf>2</inf>O, favored by ∼1 eV over competing routes. These findings identify *HCO<inf>3</inf> as the true reactive precursor and reveal that Ti substitution promotes deeper hydrogenation beyond two-electron products, enhancing CH<inf>4</inf> formation on the Ti<inf>2</inf>Zr<inf>4</inf> cluster. Overall, the results highlight the importance of node composition and surface hydroxyl groups in porphyrinic MOFs for optimizing multi-electron CO<inf>2</inf> reduction and controlling product selectivity by tailoring the metal node environments.
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Hydrogenation of CO2 to formic acid catalyzed by Co and Cu Single-atom catalysts supported on MOF-808: A DFT investigation
(2024-12-01)
Kusonjariyakun, Nawarat
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Santatiwongchai, Jirapat
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Meeprasert, Jittima
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Chotpatiwetchkul, Warot
;
Maihom, Thana
In this work, DFT-based calculations and microkinetic modeling were employed to investigate CO<inf>2</inf> hydrogenation to formic acid using H<inf>2</inf> over Co and Cu single-atom catalysts supported on MOF-808. We investigated two pathways: one without the introduction of a second H<inf>2</inf> molecule (pathway A) and another one with it (pathway B). Pathway B, which involves introducing the second H<inf>2</inf> molecule alongside the formate intermediate from the first step, exhibits significantly lower energy barriers (three times lower) for the transformation into formic acid in the second step of CO<inf>2</inf> hydrogenation. Moreover, pathway B shifts the reaction thermodynamics from endergonic to exergonic, highlighting its kinetic and thermodynamic advantages. Notably, we observed formate intermediates with quasi-bidentate geometry alongside the prevalent bidentate chelating geometry. Cu2+-MOF-808 exhibits superior catalytic activity compared to Co2+-MOF-808, attributed to Cu's stronger preference for stabilizing the transition state in its square planar geometry through the Jahn-Teller effect, which is less effective in Co. Furthermore, our microkinetic modeling consistently confirms that Cu2+-MOF-808 outperforms Co2+-MOF-808 at lower temperatures, with the rate of formic acid production depending on the concentration of H<inf>2</inf>. The desorption of formic acid is identified as the rate-determining step of the reaction, significantly impacting overall efficiency.
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Bioassay-Guided Extraction and Isolation of Natural Herbicides from Dried Zanthoxylum limonella Alston Fruits
(2025-01-01)
Chotpatiwetchkul, Warot
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Charoenying, Patchanee
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Teerarak, Montinee
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Meesin, Jatuporn
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Jongkon, Nathjanan
Weeds are problematic plant species around the world. Various strategies exist for controlling weeds, but chemical treatment remains the preferred method, particularly when using natural substances. In this research, a crude aqueous-methanol extract from dried Zanthoxylum limonella fruits was acid-base partitioned into four fractions: neutral extract (NE), acid extract (AE), basic extract (BE), and aqueous extract (AQ). These fractions were further separated into seventeen subfractions: NEF1 to NEF7, AEF1 to AEF5, and BEF1 to BEF5, which were then tested for herbicidal activity against the growth of Chinese amaranth (Amaranthus tricolor) and barnyard grass (Echinochloa crus-galli). Active subfractions were isolated via column chromatography and identified using spectroscopic methods, yielding seven active compounds: xanthoxyline (1), tambulin (2), atanine (3), prudomestin (4), skimmianine (5), p-methoxybenzoic acid (6), and methyl caffeate (7). Compounds 2–7 had not been previously reported in Z. limonella. Xanthoxyline (1) was identified as the most potent botanical herbicide, fully inhibiting seed germination of Chinese amaranth and barnyard grass. This compound also decreased seed imbibition and α-amylase activity in both species. Molecular docking studies on the α-amylase enzyme (PDB ID: 1BG9) revealed that the aromatic, hydroxy, and carbonyl groups of xanthoxyline (1) interact with the enzyme's active sites.
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Design, Synthesis, and Herbicidal Activity of Novel Dihydrochalcones Derived from Flavokawains and Their Analogs
(2026-05-01)
Poprom, Suriyaphong
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Meesin, Jatuporn
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Chotpatiwetchkul, Warot
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Waratchareeyakul, Watcharee
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Chotsaeng, Nawasit
Weeds are a major cause of crop production losses worldwide, and environmentally friendly chemical control based on natural or semisynthetic compounds has attracted increasing attention. In this study, flavokawains, a class of natural chalcones, and their analogues were converted into dihydrochalcones (1–27) via Pd-catalyzed hydrogenation. The herbicidal activities of these compounds were evaluated against Chinese amaranth (Amaranthus tricolor) and barnyard grass (Echinochloa crus-galli). Several compounds significantly inhibited seed germination and seedling growth in both species. Herbicidal activity was strongly influenced by the type and position of aromatic substituents, with electron-withdrawing groups and meta substitution providing higher activity. The meta-chloro derivative (15) exhibited the highest activity, markedly inhibiting seed germination as well as shoot and root growth. Further investigation of its mode of action revealed that this compound interfered with seed imbibition, inhibited α-amylase activity, and affected membrane integrity and malondialdehyde (MDA) levels in A. tricolor in a concentration-dependent manner. These findings provide valuable insights for the development of natural product-derived herbicides.
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3D-QSAR and molecular docking studies of peptide-hybrids as dengue virus NS2B/NS3 protease inhibitors
(2024-06-01)
Jitonnom, Jitrayut
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Meelua, Wijitra
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Tue-nguen, Panthip
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Saparpakorn, Patchreenart
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Hannongbua, Supa
Global warming and climate change have made dengue disease a global health issue. More than 50 % of the world's population is at danger of dengue virus (DENV) infection, according to the World Health Organization (WHO). Therefore, a clinically approved dengue fever vaccination and effective treatment are needed. Peptide medication development is new pharmaceutical research. Here we intend to recognize the structural features inhibiting the DENV NS2B/NS3 serine protease for a series of peptide-hybrid inhibitors (R<inf>1</inf>–R<inf>2</inf>-Lys-R<inf>3</inf>-NH<inf>2</inf>) by the 3D-QSAR technique. Comparative molecular field analysis (q2 = 0.613, r2 = 0.938, r2<inf>pred</inf> = 0.820) and comparative molecular similarity indices analysis (q2 = 0.640, r2 = 0.928, r2<inf>pred</inf> = 0.693) were established, revealing minor, electropositive, H-bond acceptor groups at the R<inf>1</inf> position, minor, electropositive, H-bond donor groups at the R<inf>2</inf> position, and bulky, hydrophobic groups at the R<inf>3</inf> position for higher inhibitory activity. Docking studies revealed extensive H-bond and hydrophobic interactions in the binding of tripeptide analogues to the NS2B/NS3 protease. This study provides an insight into the key structural features for the design of peptide-based inhibitors of DENV NS2B/NS3 protease.
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Synthesis and Anti-Plant Pathogenic Fungal Activity of Flavokawain-Derived Flavones and Related Flavones Against Rhizoctonia solani
(2024-01-03)
Onnom, Panuwat
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Chotpatiwetchkul, Warot
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Meesin, Jatuporn
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Thapanapongworakul, Pilunthana
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Kittiwongwattana, Chokchai
Flavones are organic compounds in the flavonoid family that have a diverse range of biological functions. In this research, many flavones with various substituents were designed and synthesized from flavokawains A, B, and C, and their chalcone derivatives via an iodinecatalyzed oxidative cyclization process. All synthetic flavones were investigated for antifungal activities against Rhizoctonia solani, a plant pathogenic fungus. At 400 µg, most of the substances did not inhibit the tested species and R. solani growth was inhibited by only obromoflavone (40) by 74.88±0.91%. This indicated that the detrimental effect of flavones depends on the type and position of substituent, with the ortho bromo group showing the most promise. The molecular docking study on the succinate dehydrogenase (SDH) enzyme revealed that the bromophenyl moiety (ring B) is a key molecular substructure of the flavone fungicide. The findings of this study will be used to develop novel plant pathogenic fungicides.
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Chotpatiwetchkul, Warot

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